System version: 2.0

Search engine: Meta-Storms 2.3 Beta

Database information:

• Total sample number: 346,877
• Total project number: 1,051
• MSE is developed and maintained by Bioinformatics Group,Single-Cell Center
• The database scores and meta-data (lastest release: Jul. 14, 2021)
• The latest MNS, MAS, MFI and meta-data are available here.

• The standalone software (version 2.3 Beta, release date: Mar. 13, 2020)
• You can get the latest release from Meta-Storms GitHub repository.
• The QIIME 2 plugin
• You can also get the QIIME 2 plugin of Meta-Storms 2 from q2-metastorms GitHub repository.

1. G. Jing, Y. Zhang, L. Liu, Z. Wang, Z. Sun, R. Knight, J. Xu^*, X. Su^*. A Scale-Free, Fully Connected Global Transition Network Underlies Known Microbiome Diversity,mSystems, 2021.Link
2. G. Jing, L. Liu, Z. Wang, Y. Zhang, L. Qian, C. Gao, M. Zhang, M. Li, Z. Zhang, X. Liu, J. Xu^*, X. Su^*. Microbiome Search Engine 2: a platform for taxonomic and functional search of global microbiomes on the whole-microbiome level, mSystems, 2021. Link
3. X. Su^*, G. Jing, Z. Sun, L. Liu, Z. Xu, D. McDonald, Z. Wang, H. Wang, A. Gonzalez, Y. Zhang, S. Huang, G. Huttley, R. Knight^* and J. Xu^*. Multiple-Disease Detection and Classification across Cohorts via Microbiome Search, mSystems, 2020. Link
4. X. Su^*, G. Jing, D. McDonald, H. Wang, Z. Wang, A. Gonzalez, Z. Sun, S. Huang, J. Navas, R. Knight^* and J. Xu^*. Identifying and predicting novelty in microbiome studies, mBio, 2018. Link

1. Jul. 14, 2021. The total number of samples in MSE has been updated to 346,877.
2. May 17, 2021. The total number of samples in MSE has been updated to 290,880.
3. Apr.2, 2021. The total number of samples in MSE has been updated to 290,750.
4. Feb. 1, 2021. The total number of samples in MSE has been updated to 290419.
5. Jan. 20, 2021. Our manuscript entitled "Microbiome Search Engine 2: a platform for taxonomic and functional search of global microbiomes on the whole-microbiome level" is published in mSystems.