Project Overview

P_SRP051265

Bacterial Composition of the Human Upper Gastrointestinal Tract Microbiome Is Dynamic and Associated with Genomic Instability in a Barrett’s Esophagus Cohort

Visibility: Public
Publication: Bacterial Composition of the Human Upper Gastrointestinal Tract Microbiome Is Dynamic and Associated with Genomic Instability in a Barrett’s Esophagus Cohort Link
 Journal: PLoS One
Source: NA
Sample Number: 88

Samples in this project
  

SampleID Type Habitat Year Sequence type MNS1 MAS2
S_SRP051265.SRR1732587 Other_humanbodysite Stomach 2009 16S V3-V4 - -
S_SRP051265.SRR1732588 Other_humanbodysite Esophagus 2009 16S V3-V4 - -
S_SRP051265.SRR1732589 Other_humanbodysite Stomach 2009 16S V3-V4 - -
S_SRP051265.SRR1732590 Other_humanbodysite Esophagus 2009 16S V3-V4 - -
S_SRP051265.SRR1732591 Other_humanbodysite Stomach 2010 16S V3-V4 - -
S_SRP051265.SRR1732592 Other_humanbodysite Esophagus 2010 16S V3-V4 - -
S_SRP051265.SRR1732593 Other_humanbodysite Stomach 2010 16S V3-V4 - -
S_SRP051265.SRR1732594 Other_humanbodysite Esophagus 2010 16S V3-V4 - -
S_SRP051265.SRR1732595 Other_humanbodysite Stomach 2010 16S V3-V4 - -
S_SRP051265.SRR1732596 Other_humanbodysite Esophagus 2010 16S V3-V4 - -
S_SRP051265.SRR1732597 Other_humanbodysite Stomach 2010 16S V3-V4 - -
S_SRP051265.SRR1732598 Other_humanbodysite Esophagus 2010 16S V3-V4 - -
S_SRP051265.SRR1732599 Other_humanbodysite Stomach 2010 16S V3-V4 - -
S_SRP051265.SRR1732600 Other_humanbodysite Esophagus 2010 16S V3-V4 - -
S_SRP051265.SRR1732601 Other_humanbodysite Stomach 2010 16S V3-V4 - -
S_SRP051265.SRR1732602 Other_humanbodysite Esophagus 2010 16S V3-V4 - -
S_SRP051265.SRR1732603 Other_humanbodysite Stomach 2012 16S V3-V4 - -
S_SRP051265.SRR1732604 Other_humanbodysite Stomach 2012 16S V3-V4 - -
S_SRP051265.SRR1732605 Other_humanbodysite Esophagus 2012 16S V3-V4 - -
S_SRP051265.SRR1732606 Other_humanbodysite Esophagus 2012 16S V3-V4 - -

1MNS (Microbiome Novelty Score): < 0.12: Non-novel; 0.12-0.2: Novel; > 0.2: Very novel; -: NA for samples before 2010

2MAS (Microbiome Attention Score): < 10: Low-attention; ≥ 10: High-attention; -: NA for samples before 2010